Wordom Publication List

A paper about Wordom has been published in 2007 on Bioinformatics:

Michele Seeber, Marco Cecchini, Francesco Rao, Giovanni Settanni and Amedeo Caflisch; Wordom: a program for efficient analysis of molecular dynamics simulations; Bioinformatics, 2007, 23(19):2625-2627

If you use Wordom and find it is helpful in your work, please cite it! this will give a us a reason to keep on developing (and debugging) it.

Also, if you publish a paper which cites Wordom let us know and we will add it to the following list!

Wordom has been used and cited in some published work already. A brief (not comprehensive) list is:

1. S. Muff and A. Caflisch; Kinetic analysis of molecular dynamics simulations reveals changes in the denatured state and switch of folding pathways upon single-point mutation of a beta-sheet miniprotein; Proteins: Struct. Funct. Bioinf. 70, 1185-1195, 2008

2. M. Cecchini, F. Rao, M. Seeber and A. Caflisch; Replica exchange molecular dynamics simulations of amyloid peptide aggregation; J. Chem. Phys. 121, 10748-10756, 2004

3. F. Rao and A. Caflisch; Replica exchange molecular dynamics simulations of reversible folding; J. Chem. Phys. 119, 4035-4042, 2003